PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g085810.1
Common NameERN, MtrDRAFT_AC170580g4v1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 260aa    MW: 28842 Da    PI: 5.8228
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g085810.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22.1e-182978255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ++ GVr+++ +grWvAeI+d +   ++ r +lg+f taeeAa+a+++a+  l+g
  Medtr7g085810.1 29 KFVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETAEEAARAYDEAACLLRG 78
                     799******.7*********32...35**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.5852986IPR001471AP2/ERF domain
PfamPF008474.9E-132978IPR001471AP2/ERF domain
CDDcd000182.46E-322985No hitNo description
SuperFamilySSF541712.94E-192986IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.2E-282986IPR001471AP2/ERF domain
SMARTSM003801.6E-352992IPR001471AP2/ERF domain
PRINTSPR003678.5E-83041IPR001471AP2/ERF domain
PRINTSPR003678.5E-85268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0035865Biological Processcellular response to potassium ion
GO:0048528Biological Processpost-embryonic root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MQNQKAGISV TNKGGKFKGR NRNSNNTNKF VGVRQRPSGR WVAEIKDTTQ KIRMWLGTFE  60
TAEEAARAYD EAACLLRGSN TRTNFITHVS LDSPLASRIR NLLNNRKGDK KQEDGAVASA  120
PSNSKTTISN TSTITSNDDN KESTLSTCAT RNTELFEDAY KPDLSNCKEV FESGSQSNIS  180
CGFGPFFDHF SFTQLLDMAK NDDITDASSL ELSEFERMKV ERQISASLYA INGVHEYMET  240
VQESNEALWD LPPLCSLFC*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.113880.0root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00521DAPTransfer from AT5G19790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1705800.0AC170580.3 Medicago truncatula chromosome 7 clone mte1-32m6, complete sequence.
GenBankDQ9849420.0DQ984942.1 Medicago truncatula Ser/Thr protein kinase (PRK), exostosin-like protein (EXO), putative RNA binding protein (RAN BP), transcription factor ERF (ERN), and alpha-tubulin (aTUB) genes, complete cds; and unknown gene.
GenBankEF3963300.0EF396330.1 Medicago truncatula ERF transcription factor (ERN) gene, complete cds.
GenBankEU0388020.0EU038802.2 Medicago truncatula ERN1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003624634.20.0AP2 domain class transcription factor
TrEMBLA2Q5W10.0A2Q5W1_MEDTR; ERF transcription factor
TrEMBLG7KZH50.0G7KZH5_MEDTR; AP2 domain class transcription factor
STRINGGLYMA19G29000.11e-129(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33413069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-38related to AP2 11
Publications ? help Back to Top
  1. Middleton PH, et al.
    An ERF transcription factor in Medicago truncatula that is essential for Nod factor signal transduction.
    Plant Cell, 2007. 19(4): p. 1221-34
    [PMID:17449807]
  2. Andriankaja A, et al.
    AP2-ERF transcription factors mediate Nod factor dependent Mt ENOD11 activation in root hairs via a novel cis-regulatory motif.
    Plant Cell, 2007. 19(9): p. 2866-85
    [PMID:17827349]